MIN_ALLEL_CNT 5 5 5 5 5 5 5 5
SPECIAL DIF 0 1(8) 0 0 0 0 0 0
MIN FLANK LEN 50 50 25 75 100 50 50 50
MAX DIFF TM 0.5 0.5 0.5 0.5 0.5 0.2 1 2
Original FASTQ File 259,506
Trimming 188,843
Pair-end Merge 130,603
Filter 1 19,695
Filter 2 8,083 8,083 9,568 6,616 3,752 8,083 8,083 8,083
Clusters 4,924 4,924 6,049 3,801 2,453 4,924 4,924 4,924
Filter 3 2,092 2,092 2,110 2,028 779 2,092 2,092 2,092
Unique loci 26 104 28 23 20 26 26 26
Primers Selected 23 83 23 20 15 25 21 21