MIN_ALLEL_CNT |
5 |
5 |
5 |
5 |
5 |
5 |
5 |
5 |
SPECIAL DIF |
0 |
1(8) |
0 |
0 |
0 |
0 |
0 |
0 |
MIN FLANK LEN |
50 |
50 |
25 |
75 |
100 |
50 |
50 |
50 |
MAX DIFF TM |
0.5 |
0.5 |
0.5 |
0.5 |
0.5 |
0.2 |
1 |
2 |
Original FASTQ File |
|
|
|
259,506 |
|
|
|
|
Trimming |
|
|
|
188,843 |
|
|
|
|
Pair-end Merge |
|
|
|
130,603 |
|
|
|
|
Filter 1 |
|
|
|
19,695 |
|
|
|
|
Filter 2 |
8,083 |
8,083 |
9,568 |
6,616 |
3,752 |
8,083 |
8,083 |
8,083 |
Clusters |
4,924 |
4,924 |
6,049 |
3,801 |
2,453 |
4,924 |
4,924 |
4,924 |
Filter 3 |
2,092 |
2,092 |
2,110 |
2,028 |
779 |
2,092 |
2,092 |
2,092 |
Unique loci |
26 |
104 |
28 |
23 |
20 |
26 |
26 |
26 |
Primers Selected |
23 |
83 |
23 |
20 |
15 |
25 |
21 |
21 |