Sample & platform
Best BLAST reference (length)
Genome coverage (%)
Identity (%)
Average sequence coverage
PRV1 qPCR
Co-detection (qPCR)
Date of sampling
Country of Origin
BS1-1-Illumina
SN0330 (15,396 bp)
99.7
96.0
9,793
Ct 44
PRRSV4 (Ct 26)
10/2018
Germany
OF2-1-ONT
SN0330 (15,396 bp)
33.0
96.2
3
- 6
SIV5 (Ct 36) PRRSV4 (Ct 30)
06/2017
Netherlands
OF2-2-Illumina
SN0330 (15,396 bp)
5.5
89.5
1
Ct 29
PRRSV4 (Ct 32) SIV5 (Ct 37)
06/2017
Netherlands
NS3-1-ONT
SN0330 (15,396 bp)
7.6
95.1
2
Negative
SIV5 (Ct 21)
10/2018
Germany
NS3-2-Illumina
Gd2018 (15,396 bp)
2.4
97.0
1
Negative
SIV5 (Ct 19)
10/2018
Germany